Files
qubit-tools/qubittool/__pycache__/tool.cpython-310.pyc
T

64 lines
5.5 KiB
Plaintext
Raw Normal View History

o
Þ¸Jeþã@s2UddlZddlZddlZddlZddlZddlmZmZddlm Z m
Z
ddl m Z ddl
mZddlmZddlmZmZmZmZddlmZd d
iZeed <e d d
i¡dedefddZdedefddZdedefddZd'dedefddZ d(de!fddZ"d)d e!fd!d"„Z#d*d$e$defd%d&„Z%dS)+éN)ÚWorkbookÚ
load_workbook)ÚTableÚTableStyleInfo)ÚColumnDimension)Ú Worksheet)Úcell)Ú PatternFillÚBorderÚSideÚ Alignment)ÚRowModelzgDNA from cellsÚBMÚcodexzgDNA from Buffy CoatZBCÚkeysÚpathc
Ct|ddddR}t |¡}|D]A}z6||drG||d}| |d¡| |d¡| |d¡| |d ¡td
 |  ¡| 
¡¡ƒWqt yQYqwWdƒdS1s]wYdS) úutf-8©ÚnewlineÚencodingú Test Nameú Test Dateú Green RFUúOriginal sample conc.úQubit tube conc.ú{}:{}) ÚopenÚcsvÚ
DictReaderÚ set_testdateÚset_runvalngmlÚset_sampleconcÚ set_tubeconcÚprintÚformatÚget_qubitrunidÚget_IdÚKeyError)rrÚcsvfileÚreaderÚrowÚrmv©r.úPC:\Users\ino32101\workspace\Qubit 4 Quantification\qubit-tools\qubittool\tool.pyÚread_qubit_doc_by_accessions(
   ÿö
þòr0c
CsPt|dddd}t |¡}tƒ}|D]}| |¡qt|ƒdkr* WdƒdSt|ƒd}|D]c}zH||}|durGWWdƒdS|d}|dr{||}| |d¡| |d¡| |d ¡|  |d
¡t
d   |  ¡| 
¡¡ƒWq2ty…Yq2ty•YWdƒdSwWdƒdS1s¡wYdS) Nrrrrérrrrrr)rrr ÚlistÚappendÚlenr!r"r#r$r%r&r'r(r)Ú
IndexError) rrr*r+Zrowlistr,ÚindxÚkeyr-r.r.r/Úread_qubit_doc_by_order#sF
  ú ô
  çð
øær8Údmc
CsZg}tj|dd}|j}d}|D]
}|dkr| |¡}nq|dkr1|jdd}d|_|j |¡| gd¢¡d|jd_ d|jd _ d
|jd _ d |jd
_ d|jd_ d}|D],}||} |d}t
|   ¡|   ¡ƒ}
| |d|
|  
¡|  ¡|  ¡|  ¡t|  ¡ƒg¡qZtdddd} |jdddddD]
} | D]}
| |
_qq—| |¡| ¡dS)NF©Z read_onlyÚOutput)Útitle)zNo.ZSampleIDz!Sysmex Inostics ID (Accession ID)zSecondary ID (Customer ID)zPlasma Vol. [mL]z Qubit run IDung/µLuGE/µLg{®Gá:3@ÚCg{®Gá:2@ÚDgö(\Âu.@ÚEgö(\Âu,@ÚGrr1rZD0CECEÚsolid)Z start_colorZ end_colorZ fill_typeé)Úmin_colZmax_colZmin_rowÚmax_row)ÚopenpyxlrZ
sheetnamesZget_sheet_by_nameZ create_sheetr<Z
worksheetsr3Zcolumn_dimensionsÚwidthÚformatInosticsIdr(Zget_materialidZget_customeridZget_plasmavolmlr'Zget_sampleconcÚ
convert_to_GEr Z iter_colsÚfillÚsaveÚclose)r9rZ sheetdataÚwbZsheetsÚwsZ sheetnameÚixrÚmodelZfmtIdZgrayFillÚcolumnsrr.r.r/Ú
write_run_docAsJ
þ       ÿÿÿ
rRÚidÚmatrlc
Csj| dd¡d}d}zt|durd}nt|}|r||WSW|Sty4}zWYd}~|Sd}~ww)-r1rr)ÚsplitrÚ Exception)rSrTÚiidZncdÚer.r.r/rHis 
ÿþ
þrHçÚstndvc
Cs:zt|ƒWSty}z t |¡WYd}~Sd}~ww)N)ÚfloatrWÚdecimalÚDecimal)Úvlur[rYr.r.r/Úconvert_to_numericws 
ÿr`çF%ušk?Ústndfvc
Cs6zt|ƒ|WSty}zWYd}~dSd}~ww)NZ undefined)r\rW)r_rbrYr.r.r/rI}s ÿrIr1rDc
Ctj|dd}|j}|jdkrtdƒ| dd¡j}d}d}d}d}i} |jd|dD]>}
|
D]8} |dkrI| jrIt| jt ƒrId| jvrI| j
}q0|dkr_| jr_t| jt ƒr_d | jvr_| j
}q0|dkru| jrut| jt ƒrud
| jvru| j
}q0|dkr| jrt| jt ƒrd | jvr| j
}q0| jr¬|| j
kr¬t | j | jƒ| | j<| | j} |dkr«|  
|¡q0| jrè|| j
krèt| j d | jd
| j
d| jƒz| |
|djdkrâ| |
|dj} |  | j¡WnY| jr)|| j
kr)t| j d | jd
| j
d| jƒz| |